Gene
Gene Model ID | pfu_aug2.0_1021.1_04767 |
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Locus | scaffold1021.1 : 81696 ... 83220 : + |
To GenomeBrowser | scaffold1021.1:81696..83220 |
Genes list of scaffold | scaffold1021.1 |
Synonym | pfu_aug1.0_370.1_29216 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
hepatocyte nuclear factor 3-beta | GO:0005488 GO:0006351 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_1021.1_04767.t1 | 3 | 1 | Fork_head_N | 27 | 148 | 5.1e-11 | 43.1 | 1.4e-14 | 5.1e-11 | 43.1 |
pfu_aug2.0_1021.1_04767.t1 | 3 | 1 | HNF_C | 92 | 110 | 2.4e-09 | 38.1 | 4.0 | 15000.0 | -10.8 |
pfu_aug2.0_1021.1_04767.t1 | 1 | 1 | Fork_head | 149 | 244 | 0.0 | 154.7 | 0.0 | 1.4013e-45 | 153.6 |
pfu_aug2.0_1021.1_04767.t1 | 3 | 2 | HNF_C | 271 | 288 | 2.4e-09 | 38.1 | 4.0 | 15000.0 | -3.1 |
pfu_aug2.0_1021.1_04767.t1 | 3 | 2 | Fork_head_N | 313 | 328 | 5.1e-11 | 43.1 | 1.1 | 4200.0 | -2.0 |
pfu_aug2.0_1021.1_04767.t1 | 3 | 3 | HNF_C | 359 | 414 | 2.4e-09 | 38.1 | 6.4e-13 | 2.4e-09 | 38.1 |
pfu_aug2.0_1021.1_04767.t1 | 3 | 3 | Fork_head_N | 369 | 400 | 5.1e-11 | 43.1 | 0.19 | 710.0 | 0.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_1021.1_04767.t1 | gi|676485561|ref|XP_009063695.1| | hypothetical protein LOTGIDRAFT_183845 [Lottia gigantea] | 0.0 |
pfu_aug2.0_1021.1_04767.t1 | gi|524881177|ref|XP_005097243.1| | PREDICTED: protein fork head-like [Aplysia californica] | 0.0 |
pfu_aug2.0_1021.1_04767.t1 | gi|573875788|ref|XP_006626196.1| | PREDICTED: hepatocyte nuclear factor 3-beta-like [Lepisosteus oculatus] | 0.0 |
pfu_aug2.0_1021.1_04767.t1 | gi|118601056|ref|NP_001073010.1| | forkhead transcription factor A [Strongylocentrotus purpuratus] | 0.0 |
pfu_aug2.0_1021.1_04767.t1 | gi|157278127|ref|NP_001098162.1| | hepatocyte nuclear factor 3-beta [Oryzias latipes] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_1021.1_04767.t1 |
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Definition | - |
>pfu_aug2.0_1021.1_04767.t1 atgtacgagaagcagtctctcggaccagagtgtccccagacgggtgactatctaactatgctaactgctaagggaccata cgatccatcgtgtaccagcagctatcctatcacctctataccgagtatgaactctatgggaggcctgggatctatgacca acagctactctccccctcagatggggggtatggggacgatgacccctcccggcatgacaaacctcggcatggggtcgaca atggggatgcatccgagcaccatgcacgctggaatgaactccatgaacgctatgtcacagatgaacgggatggcgggaat ggggagtatgtctatgaacgggatgagtggggcaatgtcccccatgaggatggatagttataacagggcacaggcaatca acagggcccgggacaagtcttaccgtcggagctacacccatgccaaacctccttactcgtacatatcgctcattactatg gcaatccaacagtcgccgaacaaaatgtgcacgctcagtgaaatttaccagtttattatggacttgtttcctttctatcg ccaaaatcagcagaggtggcagaactctatcagacatagtctttcatttaatgactgttttgtgaaagttcctagaactc cggaccgtccaggaaagggaagttattggacgctacacccagactctggaaatatgttcgaaaacggatgctacctcaga cgacagaagcgattcaaatgcttgaagaaggaattaattcgtcaaactcaacgtggggacggatccaccgaggacgagca tctagatgacccccattctccacagagtggtcagagctgtactcccccaccctcacatactcccacggaacctccacaac ccacggtggaaccaccggacaccaaacctgtcatcaataactccagctctcatggaaccacccacgggacaccacatcag aacaccacccctccgtcacaacatcatgaaatgctaccacaaatgaggcatttaccgcagcaggatcatttatctcaggg gtacaatccggcgggttaccaccctcactcgtttaaccaccccttttccataaacagtttaatcacggacaataaaatgg gtgaaatgaaaatgtatgaaatgcaggcagcttatggcgcatacaaccccatggcgttacccgcgatgccaaaaccggag gcaaccgtaccgatgtcggtttcagacaatagttattataaaacttacgcaccgcattcaacggcaagtttatga |
Protein
Protein ID | pfu_aug2.0_1021.1_04767.t1 |
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Definition | - |
>pfu_aug2.0_1021.1_04767.t1 MYEKQSLGPECPQTGDYLTMLTAKGPYDPSCTSSYPITSIPSMNSMGGLGSMTNSYSPPQMGGMGTMTPPGMTNLGMGST MGMHPSTMHAGMNSMNAMSQMNGMAGMGSMSMNGMSGAMSPMRMDSYNRAQAINRARDKSYRRSYTHAKPPYSYISLITM AIQQSPNKMCTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDRPGKGSYWTLHPDSGNMFENGCYLR RQKRFKCLKKELIRQTQRGDGSTEDEHLDDPHSPQSGQSCTPPPSHTPTEPPQPTVEPPDTKPVINNSSSHGTTHGTPHQ NTTPPSQHHEMLPQMRHLPQQDHLSQGYNPAGYHPHSFNHPFSINSLITDNKMGEMKMYEMQAAYGAYNPMALPAMPKPE ATVPMSVSDNSYYKTYAPHSTASL |