Gene
Gene Model ID | pfu_aug2.0_12.1_06719 |
---|---|
Locus | scaffold12.1 : 59437 ... 63875 : - |
To GenomeBrowser | scaffold12.1:59437..63875 |
Genes list of scaffold | scaffold12.1 |
Synonym | pfu_aug1.0_8887.1_02664 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_12.1_06719.t1 | 1 | 1 | C1q | 108 | 234 | 3.4e-22 | 78.8 | 2.2e-25 | 4.7e-22 | 78.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_12.1_06719.t1 | gi|548454403|ref|XP_005676376.1| | PREDICTED: complement C1q-like protein 2 [Capra hircus] | 2.0e-11 |
pfu_aug2.0_12.1_06719.t1 | gi|591309612|ref|XP_007081394.1| | PREDICTED: complement C1q-like protein 3 [Panthera tigris altaica] | 2.0e-11 |
pfu_aug2.0_12.1_06719.t1 | gi|584050071|ref|XP_006769746.1| | PREDICTED: complement C1q-like protein 2, partial [Myotis davidii] | 4.0e-11 |
Transcript
Transcript ID | pfu_aug2.0_12.1_06719.t1 |
---|---|
Definition | - |
>pfu_aug2.0_12.1_06719.t1 atggcgattgttggtgcatttgttcttatcttgttattacatgtattagattcattcaccgaaggaacaagggaatttaa cgatattgaaagacgcatcgaacaattggaagaaaaacatgacacagaaattgcgaacctcaagaaatcccttcaagaag agagaatttttaacagaaagcttgccgatagatgcacacgtttagaagaagaaatcaaaagtgccagatatggagaaacc gacctagacaaaatagaagcaatacataagcgacttctgcttaacgacaaaacgacttctgtatcacaggcaacaaaagt ggcgttctacgtaagacttatgacgaataatattgcagttggggagcgcgaaacagtcaaattcaacacagttataacca acattggaaatggatatgacgtaaataacggaatctttttttgtccaatcagtggcatttatttattcgccgcatcaatt gcatcacaacccgggtccgataagaatcttgatgcagagatcgtgcaccaagggaacgcagtcgctcatctacacgcaac cattcatggaattgacatgtcgtcgcaagttgtagttctacattgtcaacaaggggagaaagtgtggatacgacatgttg aaggggcgggagactcaaagacctttacaggcgattacagcggattcacgggagtattaatttcctcgctttaa |
Protein
Protein ID | pfu_aug2.0_12.1_06719.t1 |
---|---|
Definition | - |
>pfu_aug2.0_12.1_06719.t1 MAIVGAFVLILLLHVLDSFTEGTREFNDIERRIEQLEEKHDTEIANLKKSLQEERIFNRKLADRCTRLEEEIKSARYGET DLDKIEAIHKRLLLNDKTTSVSQATKVAFYVRLMTNNIAVGERETVKFNTVITNIGNGYDVNNGIFFCPISGIYLFAASI ASQPGSDKNLDAEIVHQGNAVAHLHATIHGIDMSSQVVVLHCQQGEKVWIRHVEGAGDSKTFTGDYSGFTGVLISSL |