Gene
Gene Model ID | pfu_aug2.0_1537.1_24990 |
---|---|
Locus | scaffold1537.1 : 211650 ... 216070 : - |
To GenomeBrowser | scaffold1537.1:211650..216070 |
Genes list of scaffold | scaffold1537.1 |
Synonym | pfu_aug1.0_6558.1_09384 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_1537.1_24990.t1 | 2 | 1 | Lectin_C | 12 | 40 | 8.0e-16 | 58.5 | 0.12 | 1800.0 | -0.4 |
pfu_aug2.0_1537.1_24990.t1 | 2 | 2 | Lectin_C | 79 | 187 | 8.0e-16 | 58.5 | 1.2e-19 | 1.8e-15 | 57.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_1537.1_24990.t1 | gi|657581512|ref|XP_008294774.1| | PREDICTED: C-type lectin domain family 4 member M-like isoform X2 [Stegastes partitus] | 4.0e-15 |
Transcript
Transcript ID | pfu_aug2.0_1537.1_24990.t1 |
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Definition | - |
>pfu_aug2.0_1537.1_24990.t1 atggagtattgtaatattttgttggccatttcgacacatttaattgtatgtgattcttttttcctagatagctttatcaa gaatagaacaacaacgacccagaaaccgtacattaccaattcaaagattttggatcccctcgccgccaccaattgtccaa aacacctgccaaggaccagaacattaatgtacaatacctttactaagcattgctttcaaataaatgttgacaagaaagct gattggttgaccgctaagctagactgtgagagtctgggtggttacctagctgttatagaaggaatcagtgataacacctt cattggattcagatcacatgcagcactagcatttcatgaagatgaacacttgtggattggtctttcagataacgatacag aaggagtgtataaatggacagacggtgcctatgtccagtaccctgtgtgggcagatggtgaacctaacggtggtacaaaa cagaactgtgtagcctataacagagaaagtgacaagtttgaagactgggggtgttcccgttcatatgcttggatatgtca gtatgatctgaatgccaggccaccattaacagctctaccacaatcaacaccatcaacaactagtactccaaaaaccacgc caagtaagacaacaaccacgcccacttctacaaccaaaatcacgcctaccgtggtgccaacaacacttccaccaaccaca acaaccgttacaaccacccaaactacgatccccataacaactgtcccaacaacaactgtgccgacaacacagcctcctat ccccactacaacagagaaaacaacgacgaccacagaggacgttggtgttattatcataggatga |
Protein
Protein ID | pfu_aug2.0_1537.1_24990.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1537.1_24990.t1 MEYCNILLAISTHLIVCDSFFLDSFIKNRTTTTQKPYITNSKILDPLAATNCPKHLPRTRTLMYNTFTKHCFQINVDKKA DWLTAKLDCESLGGYLAVIEGISDNTFIGFRSHAALAFHEDEHLWIGLSDNDTEGVYKWTDGAYVQYPVWADGEPNGGTK QNCVAYNRESDKFEDWGCSRSYAWICQYDLNARPPLTALPQSTPSTTSTPKTTPSKTTTTPTSTTKITPTVVPTTLPPTT TTVTTTQTTIPITTVPTTTVPTTQPPIPTTTEKTTTTTEDVGVIIIG |