Gene
Gene Model ID | pfu_aug2.0_1710.1_01796 |
---|---|
Locus | scaffold1710.1 : 129086 ... 137109 : + |
To GenomeBrowser | scaffold1710.1:129086..137109 |
Genes list of scaffold | scaffold1710.1 |
Synonym | pfu_aug1.0_11912.1_46436 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_1710.1_01796.t1 | 1 | 1 | zf-C3HC4_2 | 127 | 161 | 1.2e-06 | 28.4 | 1.1e-09 | 1.2e-06 | 28.4 |
pfu_aug2.0_1710.1_01796.t1 | 1 | 1 | zf-C3HC4_4 | 127 | 158 | 1.5e-06 | 27.9 | 1.5e-09 | 1.5e-06 | 27.9 |
pfu_aug2.0_1710.1_01796.t1 | 1 | 1 | zf-RING_5 | 127 | 163 | 6.0e-06 | 25.8 | 1.4e-08 | 1.4e-05 | 24.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_1710.1_01796.t1 | gi|676474894|ref|XP_009060292.1| | hypothetical protein LOTGIDRAFT_210287 [Lottia gigantea] | 0.0 |
pfu_aug2.0_1710.1_01796.t1 | gi|524879721|ref|XP_005096532.1| | PREDICTED: E3 ubiquitin-protein ligase TRAF7-like isoform X2 [Aplysia californica] | 0.0 |
pfu_aug2.0_1710.1_01796.t1 | gi|524879719|ref|XP_005096531.1| | PREDICTED: E3 ubiquitin-protein ligase TRAF7-like isoform X1 [Aplysia californica] | 0.0 |
pfu_aug2.0_1710.1_01796.t1 | gi|597758943|ref|XP_007241164.1| | PREDICTED: E3 ubiquitin-protein ligase TRAF7 isoform X2 [Astyanax mexicanus] | 0.0 |
pfu_aug2.0_1710.1_01796.t1 | gi|156403742|ref|XP_001640067.1| | predicted protein [Nematostella vectensis] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_1710.1_01796.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1710.1_01796.t1 atggaatactatttcaatcaaaggaagtatgtggagacgacatttggtccaaacacaagccccataaccactgtaacact tacaggttctggaaatggacatgttaattccccacagctgtcaagaaattctatgccgacagaatctgtagatttcagta gcgacactacacggtcctcagtggctattgatgctgccatggtcccagtaggccctatgaggacgatgtccgtgtcgtcc gccagtaatcgtaaatctgacactctagaactgccgagcattcaccacagatctaattctacaggatcaagactgtctgc gtttgctgaagtagaggatataagagtctttgtggagcagccaagcatgaagttattctgtaaactgtgtaatgttgtgt tcaaggatcctgtcattgtggcttgtggacatacctactgtagaagatgtgtatcaagacagcatgagggtcagtgccca atagataaccaagttctgtcggtggttgtggctaatattgcagtgtcagaacagatagctgagatgtatatacactgtcg atacgggtgtcgactgtcagaggatggacagacgtacatcgtagatcccacaagatgtccacaaaccatcaaaattggta acagagaagaacatgaagaaacctgtgactacatgccggtagaatgtccaaacgggatgggctgtcccacactactgaga aag |
Protein
Protein ID | pfu_aug2.0_1710.1_01796.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1710.1_01796.t1 MEYYFNQRKYVETTFGPNTSPITTVTLTGSGNGHVNSPQLSRNSMPTESVDFSSDTTRSSVAIDAAMVPVGPMRTMSVSS ASNRKSDTLELPSIHHRSNSTGSRLSAFAEVEDIRVFVEQPSMKLFCKLCNVVFKDPVIVACGHTYCRRCVSRQHEGQCP IDNQVLSVVVANIAVSEQIAEMYIHCRYGCRLSEDGQTYIVDPTRCPQTIKIGNREEHEETCDYMPVECPNGMGCPTLLR K |