Gene
Gene Model ID | pfu_aug2.0_2020.1_01952 |
---|---|
Locus | scaffold2020.1 : 31592 ... 53295 : - |
To GenomeBrowser | scaffold2020.1:31592..53295 |
Genes list of scaffold | scaffold2020.1 |
Synonym | pfu_aug1.0_18.1_14708 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
e3 ubiquitin-protein ligase nrdp1 | GO:0004842 GO:0005126 GO:0008270 GO:0010468 GO:0016567 GO:0016881 GO:0031386 GO:0045595 GO:0048518 GO:0048523 GO:1902531 GO:1903706 GO:2000377 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_2020.1_01952.t1 | 1 | 1 | U-box | 14 | 69 | 1.8e-06 | 27.7 | 7.2e-09 | 4.9e-06 | 26.4 |
pfu_aug2.0_2020.1_01952.t1 | 1 | 1 | zf-RING_6 | 16 | 56 | 6.7e-07 | 28.9 | 2.8e-09 | 1.9e-06 | 27.5 |
pfu_aug2.0_2020.1_01952.t1 | 2 | 1 | zf-C3HC4_3 | 16 | 61 | 6.0e-06 | 25.8 | 8.8e-09 | 6.0e-06 | 25.8 |
pfu_aug2.0_2020.1_01952.t1 | 1 | 1 | zf-C3HC4 | 18 | 54 | 1.1e-09 | 37.7 | 4.0e-12 | 2.7e-09 | 36.5 |
pfu_aug2.0_2020.1_01952.t1 | 1 | 1 | zf-RING_2 | 18 | 55 | 2.1e-09 | 37.0 | 8.4e-12 | 5.7e-09 | 35.6 |
pfu_aug2.0_2020.1_01952.t1 | 1 | 1 | zf-C3HC4_2 | 18 | 55 | 8.4e-09 | 35.3 | 3.6e-11 | 2.4e-08 | 33.8 |
pfu_aug2.0_2020.1_01952.t1 | 2 | 1 | zf-rbx1 | 18 | 57 | 4.2e-06 | 26.7 | 7.3e-09 | 4.9e-06 | 26.5 |
pfu_aug2.0_2020.1_01952.t1 | 1 | 1 | zf-C3HC4_4 | 18 | 50 | 5.5e-06 | 26.1 | 1.8e-08 | 1.2e-05 | 25.0 |
pfu_aug2.0_2020.1_01952.t1 | 2 | 1 | zf-RING_5 | 18 | 57 | 7.7e-06 | 25.5 | 1.1e-08 | 7.7e-06 | 25.5 |
pfu_aug2.0_2020.1_01952.t1 | 2 | 2 | zf-rbx1 | 72 | 97 | 4.2e-06 | 26.7 | 1.7 | 1100.0 | -0.3 |
pfu_aug2.0_2020.1_01952.t1 | 2 | 2 | zf-RING_5 | 81 | 97 | 7.7e-06 | 25.5 | 8.9 | 6000.0 | -3.0 |
pfu_aug2.0_2020.1_01952.t1 | 2 | 2 | zf-C3HC4_3 | 95 | 101 | 6.0e-06 | 25.8 | 4.6 | 3100.0 | -2.1 |
pfu_aug2.0_2020.1_01952.t1 | 1 | 1 | USP8_interact | 100 | 278 | 0.0 | 294.0 | 0.0 | 0.0 | 293.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_2020.1_01952.t1 | gi|676478002|ref|XP_009061293.1| | hypothetical protein LOTGIDRAFT_219611 [Lottia gigantea] | 0.0 |
pfu_aug2.0_2020.1_01952.t1 | gi|524881773|ref|XP_005097536.1| | PREDICTED: E3 ubiquitin-protein ligase NRDP1-like [Aplysia californica] | 0.0 |
pfu_aug2.0_2020.1_01952.t1 | gi|91078878|ref|XP_972869.1| | PREDICTED: E3 ubiquitin-protein ligase NRDP1 isoform X2 [Tribolium castaneum] | 0.0 |
pfu_aug2.0_2020.1_01952.t1 | gi|557324486|ref|XP_006035277.1| | PREDICTED: E3 ubiquitin-protein ligase NRDP1 [Alligator sinensis] | 0.0 |
pfu_aug2.0_2020.1_01952.t1 | gi|632986940|ref|XP_007910519.1| | PREDICTED: E3 ubiquitin-protein ligase NRDP1 [Callorhinchus milii] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_2020.1_01952.t1 |
---|---|
Definition | - |
>pfu_aug2.0_2020.1_01952.t1 atgggatatgaaacaaaccgttttcaaggtgacgttgatgaagagttgatctgtccaatctgtagtggagttttagagga acctctacaggctccgcagtgtgagcacgctttctgcagtgactgtatacaggaatggctgacccgacaaccaacgtgcc ctgttgacaggtccacgatcactcccaatcagctcaaacctgtaccaaggatattaagaaacttgctctcaaggctacag atagcatgtgagaatgctgcaaacggttgtacagcagtggatcataattgtgctcgtgaacttaggaacttggttcagca gcaggctcacaagatcgcagaaatgcaaacggaattaacggagcacaaactacaaataaatgaacaaaagagagaactcc aacttctcaaggagtacatgaggtccatgcgtgtgtcaaatccaagaatgagagagatacaatctgagatggagaatgca gatgtaataaggtgggtgggaagtttaaccgctgccagagtgacgagatggggaggaatgatctctacacctgatgccgt tctacaagccgtcatcaaaagggcgcttatagacagcgggtgcccctcacatatcgttaacgagctcatggaaaatgccc acgaacggagatggcccagcgggcttagcacactagagaccagacaactcaacaggcggcaatatgaaaattatgttaca aaaagaatcccaggaaaacaagcagtggttgtgatggcatgtgagaacgagcatatgcctgaagacctgatcatcgaacc aggactggttatgatatttgcacatggtgtagaatag |
Protein
Protein ID | pfu_aug2.0_2020.1_01952.t1 |
---|---|
Definition | - |
>pfu_aug2.0_2020.1_01952.t1 MGYETNRFQGDVDEELICPICSGVLEEPLQAPQCEHAFCSDCIQEWLTRQPTCPVDRSTITPNQLKPVPRILRNLLSRLQ IACENAANGCTAVDHNCARELRNLVQQQAHKIAEMQTELTEHKLQINEQKRELQLLKEYMRSMRVSNPRMREIQSEMENA DVIRWVGSLTAARVTRWGGMISTPDAVLQAVIKRALIDSGCPSHIVNELMENAHERRWPSGLSTLETRQLNRRQYENYVT KRIPGKQAVVVMACENEHMPEDLIIEPGLVMIFAHGVE |