Gene
Gene Model ID | pfu_aug2.0_223.1_10466 |
---|---|
Locus | scaffold223.1 : 180703 ... 189731 : - |
To GenomeBrowser | scaffold223.1:180703..189731 |
Genes list of scaffold | scaffold223.1 |
Synonym | pfu_aug1.0_537.1_07549 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_223.1_10466.t1 | 1 | 1 | dsrm | 101 | 154 | 1.9e-09 | 37.9 | 2.5e-13 | 3.8e-09 | 37.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_223.1_10466.t1 | gi|148230009|ref|NP_001088561.1| | adenosine deaminase, RNA-specific, B1 [Xenopus laevis] | 2.0e-11 |
pfu_aug2.0_223.1_10466.t1 | gi|602654180|ref|XP_007432935.1| | PREDICTED: double-stranded RNA-specific editase 1-like isoform X2 [Python bivittatus] | 4.0e-11 |
pfu_aug2.0_223.1_10466.t1 | gi|602654178|ref|XP_007432934.1| | PREDICTED: double-stranded RNA-specific editase 1-like isoform X1 [Python bivittatus] | 4.0e-11 |
Transcript
Transcript ID | pfu_aug2.0_223.1_10466.t1 |
---|---|
Definition | - |
>pfu_aug2.0_223.1_10466.t1 atggcatcatcagctcctggttttcccattaagatggaccatgacacaaaagaggcatcggctcaggggtttccttctaa ggtggaatttgacataaaagaggaatcggatccagaattttcatttaataaaaatttcaatgccaaaattgatcctgacc caaactttaaaatggaaaggaaagtcatactgaagtctgaaatgtccgcagaggaaagtaactccaatactggcaaccag gtggcagcaccatccgtacagaaggtaacggacaaacaaccagtgatgtaccttaatgagctgcgtaacggtttgaagta tcatctggtaggagaggaggaggtcaataaggagaccatgtttacaataggagtcaccgtggacaagaaaatatttcaag ggacggcaaaaagcaaaaaattagcaaaagctgaggcagcaaaggaagcgctgctcaaattgtttaatgttgtacatgat ccagatttggagaagaaactgaaacagcagggtaagtcactccgttctgagcttgtttcttccctgggcgtagtatttca tctcaagggtcaggaatcaaagggagagaacttgaggcgatgtcgacaagatttctccgatttcgacgttttgtcagcag acgggagctggggctga |
Protein
Protein ID | pfu_aug2.0_223.1_10466.t1 |
---|---|
Definition | - |
>pfu_aug2.0_223.1_10466.t1 MASSAPGFPIKMDHDTKEASAQGFPSKVEFDIKEESDPEFSFNKNFNAKIDPDPNFKMERKVILKSEMSAEESNSNTGNQ VAAPSVQKVTDKQPVMYLNELRNGLKYHLVGEEEVNKETMFTIGVTVDKKIFQGTAKSKKLAKAEAAKEALLKLFNVVHD PDLEKKLKQQGKSLRSELVSSLGVVFHLKGQESKGENLRRCRQDFSDFDVLSADGSWG |