Gene
Gene Model ID | pfu_aug2.0_2619.1_32254 |
---|---|
Locus | scaffold2619.1 : 43780 ... 50735 : - |
To GenomeBrowser | scaffold2619.1:43780..50735 |
Genes list of scaffold | scaffold2619.1 |
Synonym | pfu_aug1.0_9632.1_38938 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_2619.1_32254.t1 | 1 | 1 | C1q | 26 | 141 | 3.5e-18 | 65.8 | 7.3e-22 | 1.1e-17 | 64.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_2619.1_32254.t1 | gi|556946042|ref|XP_005986315.1| | PREDICTED: complement C1q-like protein 4 [Latimeria chalumnae] | 4.0e-09 |
pfu_aug2.0_2619.1_32254.t1 | gi|731215164|ref|XP_010622002.1| | PREDICTED: complement C1q-like protein 4, partial [Fukomys damarensis] | 4.0e-09 |
Transcript
Transcript ID | pfu_aug2.0_2619.1_32254.t1 |
---|---|
Definition | - |
>pfu_aug2.0_2619.1_32254.t1 atgatgactctcctatggtgcagtgctgtgtttgtgatagcaattaatgtaaagatggctaatggagtgtccgttgcttt tcacgctagatttagtcaaaacgtgaaaggtctttcgatcaactccacgctgaagtttgacaaggtttatgagaacctgc gcagtggttacgatgactccacaggcttattcacctgtcctgaggacggattctatgtcttccactgggctatgtttagc gctgaaggaaaatatgcttttgctgacctcatggtaaatggacaaatgattgggcgatcacatgtaaatgcaagcagtac tgtaatttaccatctgtatgaagatgaaaaggtgtggatcgagcttcatcatacttgtgttggtaaactcgcactcgagg gttggtctttcttctctggatacaagctctag |
Protein
Protein ID | pfu_aug2.0_2619.1_32254.t1 |
---|---|
Definition | - |
>pfu_aug2.0_2619.1_32254.t1 MMTLLWCSAVFVIAINVKMANGVSVAFHARFSQNVKGLSINSTLKFDKVYENLRSGYDDSTGLFTCPEDGFYVFHWAMFS AEGKYAFADLMVNGQMIGRSHVNASSTVIYHLYEDEKVWIELHHTCVGKLALEGWSFFSGYKL |