Gene
Gene Model ID | pfu_aug2.0_3.1_10052 |
---|---|
Locus | scaffold3.1 : 748632 ... 752346 : + |
To GenomeBrowser | scaffold3.1:748632..752346 |
Genes list of scaffold | scaffold3.1 |
Synonym | pfu_aug1.0_4230.1_16317 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_3.1_10052.t1 | 1 | 1 | C1q | 28 | 151 | 6.5e-23 | 81.1 | 1.0e-26 | 7.8e-23 | 80.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_3.1_10052.t1 | gi|597787246|ref|XP_007257068.1| | PREDICTED: complement C1q-like protein 4-like [Astyanax mexicanus] | 7.0e-12 |
pfu_aug2.0_3.1_10052.t1 | gi|585721372|ref|XP_006813255.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4-like [Saccoglossus kowalevskii] | 8.0e-09 |
Transcript
Transcript ID | pfu_aug2.0_3.1_10052.t1 |
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Definition | - |
>pfu_aug2.0_3.1_10052.t1 atgatggggaagggatccgtctgtcttctacttatgtttgttacagtttccctatgccaggatatgaatgtagggaaagc tgctttcagtgcagtccggaatgagaaagcagttctaccaccgttttcagtgattatatttgatgaggtgacgacaaact accaaatggcttacaatgcctcaactggaaatttcaatgctccaagtaatggtatatacgtgttcacatggaccgtagcc accaaatggggacagtggcagacgacacaactcatgtgtaatgacgatgcgatagccaacattgtagctgatagttataa gaacggagatagaagtacagccactggtacaatggttctcagtcttcaagcaaacgatagggtgtacgtgagaaccggac gtcttggtgatcgcatgatcttaaaaaatatgttttgtaccttcagcggatggaagttatatgatttatag |
Protein
Protein ID | pfu_aug2.0_3.1_10052.t1 |
---|---|
Definition | - |
>pfu_aug2.0_3.1_10052.t1 MMGKGSVCLLLMFVTVSLCQDMNVGKAAFSAVRNEKAVLPPFSVIIFDEVTTNYQMAYNASTGNFNAPSNGIYVFTWTVA TKWGQWQTTQLMCNDDAIANIVADSYKNGDRSTATGTMVLSLQANDRVYVRTGRLGDRMILKNMFCTFSGWKLYDL |