Gene
Gene Model ID | pfu_aug2.0_340.1_00635 |
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Locus | scaffold340.1 : 290028 ... 320919 : + |
To GenomeBrowser | scaffold340.1:290028..320919 |
Genes list of scaffold | scaffold340.1 |
Synonym | pfu_aug1.0_7.1_14632 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_340.1_00635.t1 | 3 | 1 | adh_short | 17 | 124 | 3.2e-18 | 66.1 | 6.0e-12 | 1.5e-08 | 34.7 |
pfu_aug2.0_340.1_00635.t1 | 3 | 1 | KR | 18 | 124 | 6.4e-10 | 38.9 | 4.6e-09 | 1.1e-05 | 25.1 |
pfu_aug2.0_340.1_00635.t1 | 3 | 2 | adh_short | 181 | 272 | 3.2e-18 | 66.1 | 3.6e-08 | 9.0e-05 | 22.4 |
pfu_aug2.0_340.1_00635.t1 | 3 | 2 | KR | 182 | 232 | 6.4e-10 | 38.9 | 0.00048 | 1.2 | 8.7 |
pfu_aug2.0_340.1_00635.t1 | 3 | 3 | adh_short | 355 | 382 | 3.2e-18 | 66.1 | 0.009 | 22.0 | 4.9 |
pfu_aug2.0_340.1_00635.t1 | 3 | 3 | KR | 355 | 380 | 6.4e-10 | 38.9 | 0.12 | 310.0 | 0.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_340.1_00635.t1 | gi|390353637|ref|XP_783943.3| | 3.0e-32 |
Transcript
Transcript ID | pfu_aug2.0_340.1_00635.t1 |
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Definition | - |
>pfu_aug2.0_340.1_00635.t1 atgggtggaggtagttctttaccacgtatttctatcccccgggatagagtatttgttgtgactggtggaaactcaggtat tggttatgaaacatcaaaaatgatagccatgatgggaggtcacgtgatcatagcatgcagatcagagagtatagccaaag aagcaattgcgaaaatgaagtcggagttcgcagaagaaaagagaaaagggaccgagggcataattcctgaaggggaaata aacgtggaattcatgcacttagatttagcctcacttacatctgtaatggcgttcattgaagcttttaaaacttccggtaa aaagttgcacgtcctgctgtgtaatgctggactcatacaagacgagcatgtgacgctctggattgcgattgaattgctgt catcatcaccaaccaagacatctttacctgatatgcacatctacatcgagacaatcatcgaatttgaccaggcaattgcg aaaatgaagtcggagttcgcagaagaaaagagaaaagggaccgagggcataattcctgaaggggaaataaacgtggaatt catgcacttagatttagcctcacttacatctgtaatggcgttcattgaagcttttaaaacttccggtaaaaagttgcacg tcctgctgtgtaatgctggactcatacaagacgagcatgaaaccacagaagacgagaatgagcttatgtttcagtccaac tatttgggtcatttactgatcaccatcaagcttctacctatcatccaaaattcaggcgaagacttgaggatcgttaacaa ttctagcgtaggtcatatgattactgacttcgacgcaaacaatattcagaggagcaagggaaatagggacgatacatggg tcttttacggcaagacgaagggatatcagattatgcaaatgtttacaatgaaccggaaattaagtaataaggacgtcacc atcaactgtatcaacccagggattgtgaggactcccttctttgataaagagcaaccaaatgactggataacttgtgtatt atcttgttacagacgatgttgtattggctatgaaacatcaaaatggatagccatgaagggaggtcacgtgatcatagctt gtagatcagaaagtagggccaaagaggtcaactaccttggacatctgctgatttcaatcaagcttttacctgtaatgatg aagtcaggcgacgatctacggattattaataattccagcgtcgggcatgaacatactaattttgatctggaaaaaatcca gggcaggaataattttgaaccgtgggattactacaacaagtccaaaggatatcagagcctttctgatggctctcatgttc tgatagatgcagctattaatccaatacacagaggtagagctaatttatacctatctgatgctggagaaagggagaccaag ttctacacaaggaataaagaaaatcaagatgcattatggagttactctatagaaagactcagcaaatatttaacagaaga tgatctagcaatctttgactcggaaaagtga |
Protein
Protein ID | pfu_aug2.0_340.1_00635.t1 |
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Definition | - |
>pfu_aug2.0_340.1_00635.t1 MGGGSSLPRISIPRDRVFVVTGGNSGIGYETSKMIAMMGGHVIIACRSESIAKEAIAKMKSEFAEEKRKGTEGIIPEGEI NVEFMHLDLASLTSVMAFIEAFKTSGKKLHVLLCNAGLIQDEHVTLWIAIELLSSSPTKTSLPDMHIYIETIIEFDQAIA KMKSEFAEEKRKGTEGIIPEGEINVEFMHLDLASLTSVMAFIEAFKTSGKKLHVLLCNAGLIQDEHETTEDENELMFQSN YLGHLLITIKLLPIIQNSGEDLRIVNNSSVGHMITDFDANNIQRSKGNRDDTWVFYGKTKGYQIMQMFTMNRKLSNKDVT INCINPGIVRTPFFDKEQPNDWITCVLSCYRRCCIGYETSKWIAMKGGHVIIACRSESRAKEVNYLGHLLISIKLLPVMM KSGDDLRIINNSSVGHEHTNFDLEKIQGRNNFEPWDYYNKSKGYQSLSDGSHVLIDAAINPIHRGRANLYLSDAGERETK FYTRNKENQDALWSYSIERLSKYLTEDDLAIFDSEK |