Gene
Gene Model ID | pfu_aug2.0_35.1_16760 |
---|---|
Locus | scaffold35.1 : 344320 ... 346473 : - |
To GenomeBrowser | scaffold35.1:344320..346473 |
Genes list of scaffold | scaffold35.1 |
Synonym | pfu_aug1.0_86513.1_42174 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
cytoplasmic a3a | GO:0005524 GO:0005737 GO:0005856 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_35.1_16760.t1 | 1 | 1 | Actin | 7 | 332 | 0.0 | 473.5 | 0.0 | 0.0 | 473.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_35.1_16760.t1 | gi|478533584|ref|XP_004440930.1| | PREDICTED: actin, cytoplasmic 1 isoform 1 [Ceratotherium simum simum] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_35.1_16760.t1 |
---|---|
Definition | - |
>pfu_aug2.0_35.1_16760.t1 atggttggtatgggacagaaggacagctatgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccc cattgaacacggtattgtcacaaactgggacgatatggagaagatctggcatcataccttctacaatgaactccgtgtgg cccccgaggaacaccctgttctcctgaccgaggctccactcaacccaaaggcaaacagagaaaagatgacacagatcatg tttgaaaccttcaactctcccgccatgtacgtagctatccaggccgtgctctcactgtacgcttccggtcgtactacagg tatcgtactggactctggggatggggtatcacatacagtacctatctacgagggatacgcccttccccacgccattttga gattagatcttgccggacgtgatctcacagattaccttatgaagatcctcacagagcgtggctactcattcaccaccaca gctgagagagaaatcgtcagagacattaaagaaaaattgtgctatgttgccttagactttgaacaagaaatggctaccgc cgcatcgtcatcttctctagagaagagttacgaacttcccgacggtcaggtcatcaccattggtaacgaaaggttcaggg cccctgaggcaatgttccagccatctttcctcggtatggaatcttcgggtatacatgaaacaacatacaacagtataatg aaatgtgacgtagacattcgtaaagacttgtacgcaaataccgttttatctggtggttctaccatgtacccaggtattgc tgaccgtatgcagaaagaaatcacagctcttgctccatcaacaatgaaaatcaagatcatagctccaccagagaggaaat actcggtgtggattggtggatctatcctcgcttctctctccaccttccagcagatgtggatcagcaaacaggaatacgac gagtccggtccatccatcgtccacaggaagtgcttttaa |
Protein
Protein ID | pfu_aug2.0_35.1_16760.t1 |
---|---|
Definition | - |
>pfu_aug2.0_35.1_16760.t1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRAPEAMFQPSFLGMESSGIHETTYNSIM KCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD ESGPSIVHRKCF |