Gene
Gene Model ID | pfu_aug2.0_408.1_27352 |
---|---|
Locus | scaffold408.1 : 49576 ... 88000 : + |
To GenomeBrowser | scaffold408.1:49576..88000 |
Genes list of scaffold | scaffold408.1 |
Synonym | pfu_aug1.0_63.1_14771 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_408.1_27352.t1 | 2 | 1 | RBP_receptor | 32 | 250 | 0.0 | 328.9 | 2.0e-30 | 3.0e-26 | 91.9 |
pfu_aug2.0_408.1_27352.t1 | 2 | 2 | RBP_receptor | 357 | 661 | 0.0 | 328.9 | 0.0 | 0.0 | 242.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_408.1_27352.t1 | gi|527255102|ref|XP_005145835.1| | PREDICTED: stimulated by retinoic acid gene 6 protein homolog [Melopsittacus undulatus] | 2.00386e-43 |
Transcript
Transcript ID | pfu_aug2.0_408.1_27352.t1 |
---|---|
Definition | - |
>pfu_aug2.0_408.1_27352.t1 atggcggatctgttgtatctgtgggactatatacaacgggacctcatcctagcaggggaccaaaactacactgtggagcc tttagaaatcacagagatatgctatcctcagttcccagaggaccagttcaggacgatggctgtagtccctgcgttcatat gttccctgatcctagccttcacgcagaagaggaggtacatcaagcggtcattcctaaatgggagacccggtctgatgcat cctatggacgtgttgagtcgctcacaccgattctcttacgctgcagcattcggaatcctgagtaacctgtgttttaacgt tattgtcaaccagcaacaggctgtcaaatatgacggaccaacgtacttcaaagtatttgtggttctcctgaccatgctga tcaatggggtaacatactatccactgttcgcggctttggcggtacagaattcactcggctactttattgggacgctgttt gcctgggcgttcgccggtgtttatatctccaacacctttatctgcacctacaatgcgataaacttcgtcacattgttcat aaacgagggcccgattatgctgtgccatttgtacctgattttcagtctacctattcgatttgtttggtcattcaaacgga aaagaaaactgaagtttgcagtggattttgacagttctgctgatctttacgattcaataaggaattcctaccagggtatt catgtcaggaagctgtatgctaaacctcctccccctccaagctttgcggtggtccttgtggtcaggtttcggacaaatgg gtccaacactaactcttttcagtcaatacggacaggtttccaatggcatccatgttgggttcgaatgataccgccagcag aagtaatagctgaaatatgttatgacaaaaagaaagtcaagatcaccctaaaacgaattcgcgcaagtgaaaagcttcgt gtaccatacgaagggggaagtgtaacgaaatataagccgtatactgtctccccggcagttccgttagctttgtcggccac aaactacttgacaatcctgagaggttacgagcaagaagcaactgaactgctcaaagctgccaagtactcagttttctgtg tccgagtgatttatctgatcacctttcccctgacgtttgtgataggcgttgtgatgattctgcgctcattagctaattac agatatctcctgaaaaagctgtatgcacgcaattattgtcacctgactccgaaggatgagataggcaactgctccgcctt ggttggcagcatgaggtatgctggatatcaagtgggatacattgtatggggatatctggtccagtttttgttgttgacat ttttggcttcgattctatcagccattatacagctttggccattcctggacacctggatcattgacaaaatacatgccatt tggccagttcttctgaccagtttcgtcataaatataatacaattactcttggcaaagttcattttcctgcaagaaagagg cgaacaactggccattgagaatagacggctattcttcatcatgacgtactttatgttcttctacaacatcttcataggtt tggtatcgtgtctttttcgcatccttaaatctatgatcctcggttcactgttaataccgaggcttgacctcagtgtatta ccgaggaaattccagagatttgatcctggattccatgccttctgtggatttatgcatgttgaaagcgcgcatacccaccc ggttataatggtgtttattagtattttacaagcagagtctttcaacactctcaaagctaacagtgaaaaaccctcactca agtccatgatgggtaagagcattgctaccgtgaatggtacgtatgatatggtacagagtaaacgcagcagaaaagcccga tggcagtggttaatagcctataccctgatccagaaccccaccctgtgtctggagagaaagatagcattggctaaacagaa aaatgagtctattataatgtcagtgttacaggataattacgaggcgactccagcggaaaaaatcgatattcaaatctga |
Protein
Protein ID | pfu_aug2.0_408.1_27352.t1 |
---|---|
Definition | - |
>pfu_aug2.0_408.1_27352.t1 MADLLYLWDYIQRDLILAGDQNYTVEPLEITEICYPQFPEDQFRTMAVVPAFICSLILAFTQKRRYIKRSFLNGRPGLMH PMDVLSRSHRFSYAAAFGILSNLCFNVIVNQQQAVKYDGPTYFKVFVVLLTMLINGVTYYPLFAALAVQNSLGYFIGTLF AWAFAGVYISNTFICTYNAINFVTLFINEGPIMLCHLYLIFSLPIRFVWSFKRKRKLKFAVDFDSSADLYDSIRNSYQGI HVRKLYAKPPPPPSFAVVLVVRFRTNGSNTNSFQSIRTGFQWHPCWVRMIPPAEVIAEICYDKKKVKITLKRIRASEKLR VPYEGGSVTKYKPYTVSPAVPLALSATNYLTILRGYEQEATELLKAAKYSVFCVRVIYLITFPLTFVIGVVMILRSLANY RYLLKKLYARNYCHLTPKDEIGNCSALVGSMRYAGYQVGYIVWGYLVQFLLLTFLASILSAIIQLWPFLDTWIIDKIHAI WPVLLTSFVINIIQLLLAKFIFLQERGEQLAIENRRLFFIMTYFMFFYNIFIGLVSCLFRILKSMILGSLLIPRLDLSVL PRKFQRFDPGFHAFCGFMHVESAHTHPVIMVFISILQAESFNTLKANSEKPSLKSMMGKSIATVNGTYDMVQSKRSRKAR WQWLIAYTLIQNPTLCLERKIALAKQKNESIIMSVLQDNYEATPAEKIDIQI |