Gene
Gene Model ID | pfu_aug2.0_476.1_20813 |
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Locus | scaffold476.1 : 57596 ... 66458 : + |
To GenomeBrowser | scaffold476.1:57596..66458 |
Genes list of scaffold | scaffold476.1 |
Synonym | pfu_aug1.0_66714.1_41852 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
acetylcholine receptor protein alpha 4 | GO:0005230 GO:0005886 GO:0006812 GO:0034220 GO:0044425 GO:0045202 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_476.1_20813.t1 | 2 | 1 | Neur_chan_LBD | 27 | 153 | 1.4e-18 | 66.8 | 1.2e-21 | 8.8e-18 | 64.2 |
pfu_aug2.0_476.1_20813.t1 | 1 | 1 | Neur_chan_memb | 143 | 369 | 0.0 | 218.5 | 0.0 | 0.0 | 218.0 |
pfu_aug2.0_476.1_20813.t1 | 2 | 2 | Neur_chan_LBD | 262 | 282 | 1.4e-18 | 66.8 | 0.71 | 5300.0 | -3.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_476.1_20813.t1 | gi|526117391|ref|NP_001267757.1| | acetylcholine receptor subunit alpha-like 2-like precursor [Aplysia californica] | 0.0 |
pfu_aug2.0_476.1_20813.t1 | gi|676436589|ref|XP_009047932.1| | hypothetical protein LOTGIDRAFT_186132 [Lottia gigantea] | 0.0 |
pfu_aug2.0_476.1_20813.t1 | gi|470012011|gb|AGI03861.1| | nicotinic acetylcholine receptor subunit type E [Aplysia californica] | 0.0 |
pfu_aug2.0_476.1_20813.t1 | gi|325296931|ref|NP_001191490.1| | nicotinic acetylcholine receptor alpha 2 subunit precursor [Aplysia californica] | 0.0 |
pfu_aug2.0_476.1_20813.t1 | gi|325296927|ref|NP_001191489.1| | nicotinic acetylcholine receptor alpha 1 subunit precursor [Aplysia californica] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_476.1_20813.t1 |
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Definition | - |
>pfu_aug2.0_476.1_20813.t1 atgagagtgttaggaatttggtttattgtggtgctgtgcagacaatgcatgtttctgaatgtagcccagcctgatgaaca acgtctacacagctacctgaagtccaaaaatgtcagcaagcttatccgacccacggggaacagctcctccgtcaagctca ccgtcaagctgggtatgaggctctcacaactccttgatgtggatgagagaaatcagattatgacgacaagtgtctggtta cgacagattataaaattaatcaacttaatttccaggagtggatggaccaacggttgtattgggatccgggagcatggcgg tatcaacatgacccatataccatcagaagaactgtggaaaccagatatcgtactctataacaatgcagacggtgagtttg tggtgactctgaagaccaaggctacagtattctatgatgtgcttgtgttctatttaccatcggacagcggggagaaaatc accttgtccatatctatcctgctagctctcactgtgttctttctactgttgtcagatatcaaccctccgacgtcattcgt gatacccttaatcggaaagtatcttctttttacaatgatagttgtgactatgtccatatttttggcggtttatacgctcg gaattcactttagaaagccttcaacccataaaatgaacccttgggtgaaacgagtattcactgaaattttacctagaata ctactaatgaaaaggccagatttggaccggaaacaaaaagtgactttccgaactccaaacggtatagaaatgagggaggt aggtttaagagacttccacagtagcacagagatgcatctcaatacgagtggcagaaacactccgaacacctttgatacta tccatagtaatccacaaggaacacctactggatatgacgaaatcacgagatacccaaaggaagtccgagaagccatcgag ggagtgaaatttgtggctgaccatctcagaagcacagacgctgacaatatggaagaacgagattggaaatacgttgccat ggttatggatagattgtttctgtatatttttacgactgcttgcgtttgtggaacgttaagtatttttctgtacgccccgt cactttatgacggcagggaggccctagctcttcaggaccctactgacagctgtacttattag |
Protein
Protein ID | pfu_aug2.0_476.1_20813.t1 |
---|---|
Definition | - |
>pfu_aug2.0_476.1_20813.t1 MRVLGIWFIVVLCRQCMFLNVAQPDEQRLHSYLKSKNVSKLIRPTGNSSSVKLTVKLGMRLSQLLDVDERNQIMTTSVWL RQIIKLINLISRSGWTNGCIGIREHGGINMTHIPSEELWKPDIVLYNNADGEFVVTLKTKATVFYDVLVFYLPSDSGEKI TLSISILLALTVFFLLLSDINPPTSFVIPLIGKYLLFTMIVVTMSIFLAVYTLGIHFRKPSTHKMNPWVKRVFTEILPRI LLMKRPDLDRKQKVTFRTPNGIEMREVGLRDFHSSTEMHLNTSGRNTPNTFDTIHSNPQGTPTGYDEITRYPKEVREAIE GVKFVADHLRSTDADNMEERDWKYVAMVMDRLFLYIFTTACVCGTLSIFLYAPSLYDGREALALQDPTDSCTY |