Gene
Gene Model ID | pfu_aug2.0_5045.1_19386 |
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Locus | scaffold5045.1 : 3716 ... 10276 : + |
To GenomeBrowser | scaffold5045.1:3716..10276 |
Genes list of scaffold | scaffold5045.1 |
Synonym | pfu_aug1.0_15148.1_32515 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
t-box transcription factor tbx20- partial | GO:0001704 GO:0003206 GO:0006355 GO:0007389 GO:0035295 GO:0060429 GO:0072132 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_5045.1_19386.t1 | 1 | 1 | T-box | 71 | 137 | 2.9e-22 | 79.0 | 2.9e-26 | 4.3e-22 | 78.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_5045.1_19386.t1 | gi|675630090|ref|XP_008943571.1| | PREDICTED: T-box transcription factor TBX20-like, partial [Merops nubicus] | 2.0e-21 |
pfu_aug2.0_5045.1_19386.t1 | gi|701296462|ref|XP_010008459.1| | PREDICTED: T-box transcription factor TBX20-like, partial [Nestor notabilis] | 2.0e-21 |
pfu_aug2.0_5045.1_19386.t1 | gi|632979704|ref|XP_007906618.1| | PREDICTED: T-box transcription factor TBX18 [Callorhinchus milii] | 7.0e-21 |
pfu_aug2.0_5045.1_19386.t1 | gi|78042595|ref|NP_001030292.1| | T-box transcription factor TBX20 [Xenopus (Silurana) tropicalis] | 9.0e-21 |
pfu_aug2.0_5045.1_19386.t1 | gi|573875120|ref|XP_006625898.1| | PREDICTED: T-box transcription factor TBX18-like [Lepisosteus oculatus] | 1.0e-20 |
Transcript
Transcript ID | pfu_aug2.0_5045.1_19386.t1 |
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Definition | - |
>pfu_aug2.0_5045.1_19386.t1 atgttgagtcgaaatgcaagtgcttttatggttgacaatttacttggacttaacagaaatacggaggtgaaaattgaaga ttgtgaaaaagaagttcatagctgtacaaatgtagcagatgagattcaatgttctactttgcatgcaagaagatgttcgc atgcctctactaaaacaataattggtaaatataaatcagagacgatatcagtggagctatgtcagaatgatttatggcat tctttccatcatataggcacagaaatgatcattactaaatcaggaaggcgcatgttccctgctatacgggtaaagttaca tggattaaaaagtgatgccaaatataaagtatggatagaatttttacaattggatcaacagaaatacagatacgtctatc atagaagttcctttgaagcgatgattgaatcctacggatatccaatgaacaaatctgaagacactacaaacagcattata caaaggggagtcaaacggcgacattctgacgaagattttgaagaagaaagtcccatgtttacagacagtgttcgtgttag ttacatagacagaccacataacttcttataccacatcggaacagttccagtgcggcttactcagaacacaaacttagtac gagtcaagtgtccgtcacagcagcacaagtccatcttacctgatgtgaagcctacagtggagaggaacgcataccaagac tttctctcggcgtgtcaaagcaaactcatctccactttctatcctcactga |
Protein
Protein ID | pfu_aug2.0_5045.1_19386.t1 |
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Definition | - |
>pfu_aug2.0_5045.1_19386.t1 MLSRNASAFMVDNLLGLNRNTEVKIEDCEKEVHSCTNVADEIQCSTLHARRCSHASTKTIIGKYKSETISVELCQNDLWH SFHHIGTEMIITKSGRRMFPAIRVKLHGLKSDAKYKVWIEFLQLDQQKYRYVYHRSSFEAMIESYGYPMNKSEDTTNSII QRGVKRRHSDEDFEEESPMFTDSVRVSYIDRPHNFLYHIGTVPVRLTQNTNLVRVKCPSQQHKSILPDVKPTVERNAYQD FLSACQSKLISTFYPH |