Gene
Gene Model ID | pfu_aug2.0_540.1_00869 |
---|---|
Locus | scaffold540.1 : 279136 ... 292297 : + |
To GenomeBrowser | scaffold540.1:279136..292297 |
Genes list of scaffold | scaffold540.1 |
Synonym | pfu_aug1.0_7216.1_31350 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_540.1_00869.t1 | 1 | 1 | C1q | 58 | 184 | 4.0e-16 | 59.1 | 3.6e-20 | 5.4e-16 | 58.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_540.1_00869.t1 | gi|675641379|ref|XP_009008580.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 6 isoform X2 [Callithrix jacchus] | 3.0e-11 |
pfu_aug2.0_540.1_00869.t1 | gi|34535340|dbj|BAC87283.1| | unnamed protein product [Homo sapiens] | 4.0e-11 |
pfu_aug2.0_540.1_00869.t1 | gi|675641377|ref|XP_009008577.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 6 isoform X1 [Callithrix jacchus] | 9.0e-11 |
Transcript
Transcript ID | pfu_aug2.0_540.1_00869.t1 |
---|---|
Definition | - |
>pfu_aug2.0_540.1_00869.t1 atgacttttctttttctgttatggctcagtgtagagacaacgattggtcagacattggtttctgaaaaatgcgacaacaa aggttcgcagcaagagctggatgcattgaaaaggcaggtccatacactcatgcaaacacccggcaaatctgttcttccag cagtgtcgttctttgctacctacgacagacgtggatatattttagctttgaacgaaactgccatatttaccagagtactc agcaatgtcggaggtggatatgacgtcactacaggtaattttgtggctccataccgcggtatctactccatatcagccac tattatgagtgaaaacgacagtgacatccatattggcgtaatgaagaatgagaagctactgatgactctttacagcaatc gtaacacttacccacaatcctccgctacagttcatcttccgctggacattaacgacaggatatatctgatcagtacctta aggccaaacaaaaaactgcatgtcttcccaaattcaccaaatttttacaatgctttttctggagctctcgttgttctttt atga |
Protein
Protein ID | pfu_aug2.0_540.1_00869.t1 |
---|---|
Definition | - |
>pfu_aug2.0_540.1_00869.t1 MTFLFLLWLSVETTIGQTLVSEKCDNKGSQQELDALKRQVHTLMQTPGKSVLPAVSFFATYDRRGYILALNETAIFTRVL SNVGGGYDVTTGNFVAPYRGIYSISATIMSENDSDIHIGVMKNEKLLMTLYSNRNTYPQSSATVHLPLDINDRIYLISTL RPNKKLHVFPNSPNFYNAFSGALVVLL |