Gene
Gene Model ID | pfu_aug2.0_620.1_00958 |
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Locus | scaffold620.1 : 104246 ... 106075 : - |
To GenomeBrowser | scaffold620.1:104246..106075 |
Genes list of scaffold | scaffold620.1 |
Synonym | pfu_aug1.0_501.1_50898 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
neuronal acetylcholine receptor subunit alpha-6-like | GO:0006811 GO:0016020 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_620.1_00958.t1 | 1 | 1 | Neur_chan_LBD | 52 | 258 | 7.50003e-41 | 139.6 | 1.54143e-44 | 1.2e-40 | 139.0 |
pfu_aug2.0_620.1_00958.t1 | 2 | 1 | Neur_chan_memb | 266 | 390 | 2.3e-16 | 60.4 | 7.5e-20 | 5.6e-16 | 59.1 |
pfu_aug2.0_620.1_00958.t1 | 2 | 2 | Neur_chan_memb | 404 | 429 | 2.3e-16 | 60.4 | 0.19 | 1400.0 | -1.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_620.1_00958.t1 | gi|524885841|ref|XP_005099524.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6-like [Aplysia californica] | 5.60519e-45 |
pfu_aug2.0_620.1_00958.t1 | gi|524873009|ref|XP_005093258.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Aplysia californica] | 9.80909e-45 |
pfu_aug2.0_620.1_00958.t1 | gi|675848398|ref|XP_009009759.1| | hypothetical protein HELRODRAFT_62259, partial [Helobdella robusta] | 2.94273e-44 |
pfu_aug2.0_620.1_00958.t1 | gi|676449210|ref|XP_009051982.1| | hypothetical protein LOTGIDRAFT_114875 [Lottia gigantea] | 5.04467e-44 |
pfu_aug2.0_620.1_00958.t1 | gi|676494227|ref|XP_009066492.1| | hypothetical protein LOTGIDRAFT_109048, partial [Lottia gigantea] | 6.02558e-44 |
Transcript
Transcript ID | pfu_aug2.0_620.1_00958.t1 |
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Definition | - |
>pfu_aug2.0_620.1_00958.t1 atgcacctccgatcattaaaccacttcattgttatgaatattgctagattattcttcaacaatctatctgaactagacat gaagaggatacttttcgcctatttttccttaaatctcattccctttataaattctcaaacgcaaaatgacattgacagaa taagcgctgatctcttgagaaattatactaagacgtcgaggggaagtgaaaatcagtcctttccaacaatacttgacccc gaatttttccttgttaacataaacgacttcgatgaaatcacaggaacttttgccgcagttggatttttccgattcttttg gacggatgacagattggtgtggaatatatccgattatggaggcatcgatagagtaacatttgatgaatcacaggtttgga caccaaatattatcattgcaaattctaacggaaatgaagaaatacagaaccttggacaagacaaggtcccagtggttgct cattcaaacggaaccgtcatgtggttgccagggaggcattttaaaacgttctgcggaccaaatgtgcaaaaatttccata cgatactcagatttgtgagatatggttcataccgtggggtcactcacccaaagcagtaacattcaatccaacttctcaga aggttaaccttaagctctattgtaataatagcatttgggaaatgaccgacacatacatgacgtcattcaccaaaagcgcg gatgagtcttttgaattccagatgctgaaaatctacttccatctaaagcggcgggaaacattttatgtcgtaaatatgat tttgcctatcatggtaatgggactgctgaaccttctagtattcctactgccacctcaatcaggcgaaagagtgggattct caataacagttctccttgccatcagtgtgtttttgacaatcgcctctgacaaccttcctaaaaattcgtatcctgctgta tctacattgtgtttcaagcttttaatggatttcatcattagtagtatggttgtcttgttcaccatcgtagggctgaggtt ctacagcaaaagcgaaggcgaaccggtaccgagcaatttacaaaaactggcgaggatcattcttcgcagatacagacgac gaaaagtatctgatgtacacgaggatgagaaatacgaaaaagaattgagagaattcaaacaaaatgaagatgcaatcatt cttcaatactctgaaactgagaaactgacatggaacgacattggaaaagcctcagatatcattttcctttcggtttgttt acttggtttcatcacttcacatgtaacattttacatgtacatttacttctaa |
Protein
Protein ID | pfu_aug2.0_620.1_00958.t1 |
---|---|
Definition | - |
>pfu_aug2.0_620.1_00958.t1 MHLRSLNHFIVMNIARLFFNNLSELDMKRILFAYFSLNLIPFINSQTQNDIDRISADLLRNYTKTSRGSENQSFPTILDP EFFLVNINDFDEITGTFAAVGFFRFFWTDDRLVWNISDYGGIDRVTFDESQVWTPNIIIANSNGNEEIQNLGQDKVPVVA HSNGTVMWLPGRHFKTFCGPNVQKFPYDTQICEIWFIPWGHSPKAVTFNPTSQKVNLKLYCNNSIWEMTDTYMTSFTKSA DESFEFQMLKIYFHLKRRETFYVVNMILPIMVMGLLNLLVFLLPPQSGERVGFSITVLLAISVFLTIASDNLPKNSYPAV STLCFKLLMDFIISSMVVLFTIVGLRFYSKSEGEPVPSNLQKLARIILRRYRRRKVSDVHEDEKYEKELREFKQNEDAII LQYSETEKLTWNDIGKASDIIFLSVCLLGFITSHVTFYMYIYF |