Gene
Gene Model ID | pfu_aug2.0_74.1_13535 |
---|---|
Locus | scaffold74.1 : 161266 ... 165020 : + |
To GenomeBrowser | scaffold74.1:161266..165020 |
Genes list of scaffold | scaffold74.1 |
Synonym | pfu_aug1.0_806.1_22307 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
homeobox protein six1 | GO:0000981 GO:0002074 GO:0005634 GO:0005737 GO:0006355 GO:0006915 GO:0014857 GO:0021984 GO:0043282 GO:0043565 GO:0048741 GO:0048935 GO:2000980 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_74.1_13535.t1 | 2 | 1 | Homeobox | 89 | 112 | 2.4e-15 | 55.8 | 0.22 | 800.0 | -0.3 |
pfu_aug2.0_74.1_13535.t1 | 2 | 2 | Homeobox | 145 | 195 | 2.4e-15 | 55.8 | 2.4e-18 | 9.0e-15 | 54.0 |
pfu_aug2.0_74.1_13535.t1 | 1 | 1 | Homeobox_KN | 160 | 193 | 2.9e-12 | 46.0 | 1.9e-15 | 6.9e-12 | 44.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_74.1_13535.t1 | gi|524910339|ref|XP_005110050.1| | PREDICTED: homeobox protein six1a-like isoform X1 [Aplysia californica] | 0.0 |
pfu_aug2.0_74.1_13535.t1 | gi|586946361|ref|NP_001277017.1| | SIX homeobox 1 [Saccoglossus kowalevskii] | 0.0 |
pfu_aug2.0_74.1_13535.t1 | gi|528524634|ref|NP_001268684.1| | SIX homeobox 1 [Strongylocentrotus purpuratus] | 0.0 |
pfu_aug2.0_74.1_13535.t1 | gi|46309555|ref|NP_996978.1| | homeobox protein six1b [Danio rerio] | 0.0 |
pfu_aug2.0_74.1_13535.t1 | gi|410898072|ref|XP_003962522.1| | PREDICTED: homeobox protein SIX1 [Takifugu rubripes] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_74.1_13535.t1 |
---|---|
Definition | - |
>pfu_aug2.0_74.1_13535.t1 atgttacatgataatggcgctcagactggtgtggggtcccccaaccctgccatgcttccgtccttcggcttcacccagga gcaggtcgcttgtgtgtgcgaggtacttcagcagggagggaacattgatagacttgccagatttctctggtcacttcccg cctgtgaacatttacacaaaaacgaaagtgttctcaaagccaaagcagtggtggcttttcacagaggaaacttcaaggaa ctttacaaaatcttagaaagcaataatttctcacctcacaatcatcctaaacttcaagcactatggctgaaagcgcacta tattgaggcagaaaaactccgtgggcgaccactcggagccgtgggcaagtacagagtcagacggaaattcccactaccaa gaacaatatgggacggtgaggaaacaagttactgtttcaaagaaaaatctcggacaatactcagggaatggtaccaacat aacccgtacccctcccctcgggaaaagagggagctggcagaagccaccggtctcaccaccacacaggtcagcaactggtt caagaatcggcgacaaagagatagggcagcggaacagaaagatagggataccacacacggtggtggcatgggacaggact taggatctcctcaaagtgacgacaaagatgatttgagcgatgacttacaagttccgccgcaaattcagacaaaaatggaa ccacaagacatgccaacaaaatttgaacctattgacataaatacatcacagtcgcattctttgtatacggacctccaaaa agcgatgccaagcggagggtttcctggaatgatgacagggggtggtcccctaacacacccgtccgtcaataatgggacga acgatcagccgccaccgaatgatctaatggacgagtaccacacgttatag |
Protein
Protein ID | pfu_aug2.0_74.1_13535.t1 |
---|---|
Definition | - |
>pfu_aug2.0_74.1_13535.t1 MLHDNGAQTGVGSPNPAMLPSFGFTQEQVACVCEVLQQGGNIDRLARFLWSLPACEHLHKNESVLKAKAVVAFHRGNFKE LYKILESNNFSPHNHPKLQALWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRTILREWYQH NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDRDTTHGGGMGQDLGSPQSDDKDDLSDDLQVPPQIQTKME PQDMPTKFEPIDINTSQSHSLYTDLQKAMPSGGFPGMMTGGGPLTHPSVNNGTNDQPPPNDLMDEYHTL |