Gene
Gene Model ID | pfu_aug2.0_91.1_03601 |
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Locus | scaffold91.1 : 533514 ... 534988 : + |
To GenomeBrowser | scaffold91.1:533514..534988 |
Genes list of scaffold | scaffold91.1 |
Synonym | pfu_aug1.0_23556.1_33356 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
neuronal acetylcholine receptor subunit alpha-6 | GO:0005892 GO:0008144 GO:0033603 GO:0051291 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_91.1_03601.t1 | 1 | 1 | Neur_chan_LBD | 47 | 247 | 2.4e-40 | 138.0 | 4.90454e-44 | 3.60001e-40 | 137.4 |
pfu_aug2.0_91.1_03601.t1 | 2 | 1 | Neur_chan_memb | 257 | 341 | 5.6e-14 | 52.5 | 5.5e-16 | 4.1e-12 | 46.5 |
pfu_aug2.0_91.1_03601.t1 | 2 | 2 | Neur_chan_memb | 385 | 414 | 5.6e-14 | 52.5 | 0.00014 | 1.0 | 9.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_91.1_03601.t1 | gi|512880895|ref|XP_002942944.2| | 0.0 | |
pfu_aug2.0_91.1_03601.t1 | gi|585166608|ref|XP_006735408.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 isoform X1 [Leptonychotes weddellii] | 0.0 |
pfu_aug2.0_91.1_03601.t1 | gi|426359517|ref|XP_004047018.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 [Gorilla gorilla gorilla] | 0.0 |
pfu_aug2.0_91.1_03601.t1 | gi|532039370|ref|XP_005362545.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 [Microtus ochrogaster] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_91.1_03601.t1 |
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Definition | - |
>pfu_aug2.0_91.1_03601.t1 atgggtatatataatcttaacaaccttcgcgttgatggcaaatcaaagatgtatactttcaatctacagaatatattaat tttttctttgctcttacatctcgtattgtcgtcaacaaagagtgactatgcaggagttttggaggaaatattccaaacaa acaagtataacaagaaagtactaccacaggaagattcagacgaacctctagaagtccatatcagcttccagctttttgga attaatgaaattgacgaggtattggagaaaatggttacaaccggttatcttgtagtatcatggaacgacttgggactagc ctgggatccttcaaatcacaatcaagtggaaaatgtatttgtcccacaagatgacgtatggaagccggacgtttttctgc aaaatggtttcaagaaattggtagagcttggaactccttcttactacatttccgttgattatgacggttggatgacatgg tttccttttgaggtctttgaaactagatgttctttagatacgacttactttccatttgacgaacagaaatgtaacgtttc tattgtaatatggagccatacattgaatgaaataatctttgtggatgacgatgatgcaataatttttaacgaacttttcc agcaaaacagcgtttgggacgtcatctctatttcataccatatatacgaagactcgacagaacctaaaataacttacact ataaaactaaaacggaaacccctgtactatattttcaacatactgctaccagtagagtttctaggatttctgaatggact tgtgtttgtgattccagcggatactggtgagaagatggggttttcaatgacggtatttctatccctggcagttttcctga ccagcataagtgaggtactaccagtaaattctgtaaacgtatcagttcttggcgtatatctcctcttacaagtcattata ggagtacgcgtactaattacgtcagctttacagttacgtctgaatgctcgcagtacgtcacatccggtcactgggatgta cctcagaatcgttcaaatgaaatccaaatgctgtgggagaacagtcaaaagaaagacatgtccaaatgaggtgactgcca tagacaggatagacatagaggcaccgtcggcagatttctcctggggtcaggtggtttcagcaatagacttgttaggattt tggctttttcttgttgtttacagtatgatgtcattggtaatgctagccattcttaatattcaattgtctaaataa |
Protein
Protein ID | pfu_aug2.0_91.1_03601.t1 |
---|---|
Definition | - |
>pfu_aug2.0_91.1_03601.t1 MGIYNLNNLRVDGKSKMYTFNLQNILIFSLLLHLVLSSTKSDYAGVLEEIFQTNKYNKKVLPQEDSDEPLEVHISFQLFG INEIDEVLEKMVTTGYLVVSWNDLGLAWDPSNHNQVENVFVPQDDVWKPDVFLQNGFKKLVELGTPSYYISVDYDGWMTW FPFEVFETRCSLDTTYFPFDEQKCNVSIVIWSHTLNEIIFVDDDDAIIFNELFQQNSVWDVISISYHIYEDSTEPKITYT IKLKRKPLYYIFNILLPVEFLGFLNGLVFVIPADTGEKMGFSMTVFLSLAVFLTSISEVLPVNSVNVSVLGVYLLLQVII GVRVLITSALQLRLNARSTSHPVTGMYLRIVQMKSKCCGRTVKRKTCPNEVTAIDRIDIEAPSADFSWGQVVSAIDLLGF WLFLVVYSMMSLVMLAILNIQLSK |