Gene
Gene Model ID | pfu_aug2.0_922.1_08016 |
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Locus | scaffold922.1 : 179660 ... 195484 : + |
To GenomeBrowser | scaffold922.1:179660..195484 |
Genes list of scaffold | scaffold922.1 |
Synonym | pfu_aug1.0_4847.1_59628 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_922.1_08016.t1 | 2 | 1 | SOXp | 33 | 57 | 2.2e-06 | 28.1 | 4.3 | 4900.0 | -1.8 |
pfu_aug2.0_922.1_08016.t1 | 1 | 1 | HMG_box | 34 | 102 | 1.1e-26 | 92.8 | 1.5e-29 | 1.7e-26 | 92.2 |
pfu_aug2.0_922.1_08016.t1 | 1 | 1 | HMG_box_2 | 35 | 101 | 1.5e-10 | 41.2 | 2.2e-13 | 2.6e-10 | 40.5 |
pfu_aug2.0_922.1_08016.t1 | 2 | 2 | SOXp | 103 | 128 | 2.2e-06 | 28.1 | 1.9e-09 | 2.2e-06 | 28.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_922.1_08016.t1 | gi|524905732|ref|XP_005108229.1| | PREDICTED: transcription factor SOX-21-like isoform X1 [Aplysia californica] | 0.0 |
pfu_aug2.0_922.1_08016.t1 | gi|259013436|ref|NP_001158461.1| | Sox14/21-like protein [Saccoglossus kowalevskii] | 0.0 |
pfu_aug2.0_922.1_08016.t1 | gi|657741006|ref|XP_008305572.1| | PREDICTED: transcription factor SOX-14 [Cynoglossus semilaevis] | 0.0 |
pfu_aug2.0_922.1_08016.t1 | gi|260796049|ref|XP_002593017.1| | hypothetical protein BRAFLDRAFT_263176 [Branchiostoma floridae] | 0.0 |
pfu_aug2.0_922.1_08016.t1 | gi|498993125|ref|XP_004552925.1| | PREDICTED: transcription factor Sox-14 [Maylandia zebra] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_922.1_08016.t1 |
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Definition | - |
>pfu_aug2.0_922.1_08016.t1 atgtcaagttgcggagaaatgagcccacaggatctatcatcgggtgcatctaatgacacttactgtgactcctctaaaat gggggccaacggagaacacgtgaaacgccctatgaacgcttttatggtgtggtctaggggacaaagacgtaaaatggctc aggataatcctaaaatgcataattctgaaatttctaaacgtcttggagcagaatggaaacttttatcagaggatgacaag agaccgtttatagatgaagcaaaacgactacgagctttgcatatgaaggaacacccagactacaaatatagaccaagaag gaaacctaaatcattgttaaagaaagataagtacgcctttccaatgcctatgatccccgggatgggtcctctaggagcgc tacccccgggctttggacagctaccaccgtcaacagagggtatgtcattaagcgagaagatgagggccttcctaccacct acttcatctcacggatcttacccgtcccatctagaaccaagcaaagtagaatcttcatctcatggtgcatttagtgctca ggacagactttattcaccctatatgtctgcgctcagtgctcacagcgcgtcagcagcggcagctctcagtgcggcaggga tgcccccggccgcccactcccatcccagtcagtacctcctgccgtgttgcccgccgggctatctgccctcacagtcggac atcacacgcccggtggcgtatgttttcgtcaaaccagaggaccattacaggcatcctataatgtgcttcaaacaaaaaga tgatgatgatgatgatgatgatgacgatgatgatgatgatgataacgatgatgatgatgatgatgatgatgacgatgatg atgatgatgatgatgatgatggtgtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatg atgatgatgatgaaaaagatgatgataatgacgacgacgacgacaatgatgatgatggtgatgatgatgacataa |
Protein
Protein ID | pfu_aug2.0_922.1_08016.t1 |
---|---|
Definition | - |
>pfu_aug2.0_922.1_08016.t1 MSSCGEMSPQDLSSGASNDTYCDSSKMGANGEHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLSEDDK RPFIDEAKRLRALHMKEHPDYKYRPRRKPKSLLKKDKYAFPMPMIPGMGPLGALPPGFGQLPPSTEGMSLSEKMRAFLPP TSSHGSYPSHLEPSKVESSSHGAFSAQDRLYSPYMSALSAHSASAAAALSAAGMPPAAHSHPSQYLLPCCPPGYLPSQSD ITRPVAYVFVKPEDHYRHPIMCFKQKDDDDDDDDDDDDDDDNDDDDDDDDDDDDDDDDDDGVMMMMMMMMMMMMMMMMMM MMMMKKMMIMTTTTTMMMMVMMMT |