Gene
Gene Model ID | pfu_aug2.0_935.1_17953 |
---|---|
Locus | scaffold935.1 : 160156 ... 167781 : + |
To GenomeBrowser | scaffold935.1:160156..167781 |
Genes list of scaffold | scaffold935.1 |
Synonym | pfu_aug1.0_3068.1_23153 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_935.1_17953.t1 | 2 | 1 | VWA | 34 | 204 | 0.0 | 161.3 | 6.2e-38 | 2.3e-34 | 118.6 |
pfu_aug2.0_935.1_17953.t1 | 2 | 1 | VWA_2 | 34 | 201 | 9.1e-15 | 55.1 | 8.2e-15 | 3.1e-11 | 43.7 |
pfu_aug2.0_935.1_17953.t1 | 2 | 2 | VWA | 236 | 395 | 0.0 | 161.3 | 2.8e-15 | 1.0e-11 | 44.8 |
pfu_aug2.0_935.1_17953.t1 | 2 | 2 | VWA_2 | 329 | 382 | 9.1e-15 | 55.1 | 0.00025 | 0.93 | 9.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_935.1_17953.t1 | gi|524880674|ref|XP_005096998.1| | PREDICTED: collagen alpha-3(VI) chain-like, partial [Aplysia californica] | 7.0e-40 |
Transcript
Transcript ID | pfu_aug2.0_935.1_17953.t1 |
---|---|
Definition | - |
>pfu_aug2.0_935.1_17953.t1 atgatgaagtgcattttacctctatttgctatgatatcagtcctttatgcagcacctgcattagaaagaaatataagatg gtgcaaaggtaagccagccgatgtgtttttcctgttggacagttcctccagtatatggatcgttgactaccgaaaacaac tgaacttcgctgctaacgttacagactttttccaggtttcggaggacaagactcgtattgcagcggccgctttttcgaac agatattcacaaaaatttgaatttggtgattacaacggcacggacaacctaagggagaaaattcatgaaatgccatattt gactggtggcacaaaaacagacattgctttgaagaaaatgagggaatcttttcaaacaaatgctagaaaaggagtagccc acattgcattcgtagtcactgatggaaattcagagtcatttaaggagactcggagggaggccgaaaagctgaaaaaggac ggagtatacgtgtttgccattggaattggccgtagaattagtaataaggaattgagagccatagggagcgaaccagagga ggagtttgtgtaccaagtggaggattttgataggctgaatgacatcagagacactgtcagagatacactagattactcta cttgtcaagcacctactaccccaccccctatggacgagccgagatgtagcgccaaatctgatgttgacgttgttttcgca ctggatgcaccttccatgggcattgagcaaactcgcagcgtgtacaacttcattggagaagtgacagaggaaattcacga cgatttaggtagagtgcaggttggaatgatgtcaaaaatttgtaatgaccatgatatacagctgaaacaatacaaagatg aattttcactagctcagacaatatcaaatgccaagttcaaagggttggaccatcaacttcataaacttcgtcacgaagga tacagcttggaaaatggcggaagaccgaatgctaagaaggttgctgtgctttttgttgatgacagtatagaaaaatacga ttccctgcttttggaggctgaagatgcaaagattagaaatggtattgatgtgtacgttgtggccattggagacaatgtaa actatgcagcttgtggtttgatggccagcaaaccaagcaacgttatcaaagtctcttctcatcgagatcttggcttacta aaagatgacttcctttttactttctgcaatggcacaggtgtaacaataaattctctacatccgggtgtaattccgacgga acttggccgccatttcggaagatggctgcgcatactacagacattattatttccaattttgagaatgaccttgaaaacca gagtccaaggagctcagacaaccatttattgtgccgtgtccgaagaactaaacgatgtttccgggaagtatttcaggtat gtaaattga |
Protein
Protein ID | pfu_aug2.0_935.1_17953.t1 |
---|---|
Definition | - |
>pfu_aug2.0_935.1_17953.t1 MMKCILPLFAMISVLYAAPALERNIRWCKGKPADVFFLLDSSSSIWIVDYRKQLNFAANVTDFFQVSEDKTRIAAAAFSN RYSQKFEFGDYNGTDNLREKIHEMPYLTGGTKTDIALKKMRESFQTNARKGVAHIAFVVTDGNSESFKETRREAEKLKKD GVYVFAIGIGRRISNKELRAIGSEPEEEFVYQVEDFDRLNDIRDTVRDTLDYSTCQAPTTPPPMDEPRCSAKSDVDVVFA LDAPSMGIEQTRSVYNFIGEVTEEIHDDLGRVQVGMMSKICNDHDIQLKQYKDEFSLAQTISNAKFKGLDHQLHKLRHEG YSLENGGRPNAKKVAVLFVDDSIEKYDSLLLEAEDAKIRNGIDVYVVAIGDNVNYAACGLMASKPSNVIKVSSHRDLGLL KDDFLFTFCNGTGVTINSLHPGVIPTELGRHFGRWLRILQTLLFPILRMTLKTRVQGAQTTIYCAVSEELNDVSGKYFRY VN |