Genome Projects

OIST Marine Genomics Unit since 2008

Genome Sequencing / Annotation Projects
Genome Sequencing Projects
Cots

Acanthaster planci

The Whole Genome Shotgun Sequencing Project of Okinawan and Australian crown of thorns starfish, Acanthaster planci.

version: 1.0

Aacu

Acropora acuminata

version: 1.0

Aawi

Acropora awi

version: 1.0

Acyt

Acropora cytherea

version: 1.0

Adig

Acropora digitifera

version: 2.0

Aech

Acropora echinata

version: 1.0

Aflo

Acropora florida

version: 1.0

Agem

Acropora gemmifera

version: 1.0

Ahya

Acropora hyacinthus

version: 1.0

Aint

Acropora intermedia

version: 1.0

Amic

Acropora microphthalma

version: 1.0

Amur

Acropora muricata

version: 1.0

Anas

Acropora nasuta

version: 1.0

Asel

Acropora selago

version: 1.0

Aten

Acropora tenuis

version: 1.0

Ayon

Acropora yongei

version: 1.0

83 amphidinium

Amphidinium

version: 1.0

Amyr

Astreopora myriophthalma

version: 1.1

Aurantiochytrium

Aurantiochytrium sp. kh105

version:

69 aurelia

Aurelia aurita

The genome project of the scyphozoan jellyfish Aurelia aurita (moon jelly) from Atlantic ocean.

The genome assembly ABSv1.0 is 377 Mbp long and consists of 2710 scaffolds with <...

version: Atlantic ocean

75 ephyra aurelia pacific

Aurelia aurita

The genome project of the scyphozoan jellyfish Aurelia aurita (moon jelly) from Pacific ocean (laboratory strain known as "Roscoff").

The genome assembly ARSv1.0 is 429 Mbp long...

version: Pacific Ocean

Umibudo

Caulerpa lentillifera

The whole genome shotgun sequencing project of the siphonous green alga, Caulerpa lentillifera.

version: 1.1

Chlorellaa99

chlorellaA99

Genome sequencing of Chlorella sp. A99, the symbiotic algae in hydra

Green hydra harbors symbiotic Chlorella in the endodermal epithelial cells. They established mutualistic relat...

version: 0.1

49 mozuku

Cladosiphon okamuranus

Okinawa Mozuku Genome Project 160227

version: 0.4

49 mozuku

Cladosiphon okamuranus C strain

version: version 1.0

49 mozuku

Cladosiphon okamuranus K strain

version: version 1.0

49 mozuku

Cladosiphon okamuranus O strain

version: version 1.0

49 mozuku

Cladosiphon okamuranus S strain

version: version 2

Dicyemid lu iss crop

Dicyema Japonicum

Dicyemids, previously called "mesozoans" (intermediates between unicellular protozoans and multicellular metazoans), are an enigmatic animal group. They have a highly simplified adult body, compris...

version: 8 February 2019

Symbd

Durusdinium sp.

Symbiodinium clade D

version: 1.0

Kairou

Euplectella aspergillum

RNA sequence project of deep sea glass sponge, Euplectella aspergillum.

version: version 0.1

Fanc

Fimbriaphyllia ancora

version: ver1.0

82 hv

Hydra viridissima

The genome project of Hydra viridissima strain A99 H. viridissima is the most basal species in the genus Hydra, and a symbiotic species that establishes a mutualistic relationship with mi...

version: 1.0

Lingula

Lingula anatina

The genome project of the lingulid brachiopod Lingula anatina.

The 425-Mb genome (3,830 scaffolds with contig N50 in 56 kbp and scaffold N50 in 294 kbp) was sequenced from male gon...

version: 1.0

Lingula2

Lingula anatina

Brachiopod, Lingula anatina version 2

version: 2.0

Mcac

Montipora cactus

version: 1.1

Meff

Montipora efflorescens

version: 1.1

70 morbakka

Morbakka virulenta

The genome project of the cubozoan jellyfish Morbakka virulenta (fire jellyfish).

The genome assembly MVIv1.0 is 952 Mbp long and consists of 4538 scaffolds with N50=2.17...

version:

Ito mozuku

Nemacystus decipiens

version: version 1

Nemertean

Notospermus geniculatus

Nemertean, Notospermus geniculatus

version: 2.0

Catfish

Pangasianodon hypophthalmus

version: catfish version 2018

Phoronid

Phoronis australis

Phoronid, Phoronis australis

version: 2.0

Pinctada fucata photo

Pinctada fucata

Chromosome-scale, haplotype-merged genome assembly (version: 3.0) of the pearl oyster. Genomic DNA was obtained from the MK (Mikimoto) individual (Takeuchi et al., 2022).

version: 3.0

Pinctada fucata photo

Pinctada fucata

Chromosome-scale, haplotype-phased genome assembly (version: 4.1A, Reference Haplotype) of the pearl oyster. Genomic DNA was obtained from the AI (Ainoshima) individual (Takeuchi et al., 2022).

version: 4.1A

Pinctada fucata photo

Pinctada fucata

Chromosome-scale, haplotype-phased genome assembly (version: 4.1B, Alternative Haplotype) of the pearl oyster. Genomic DNA was obtained from the AI (Ainoshima) individual (Takeuchi et al., 2022).

version: 4.1B

Pau

Porites australiensis

version: 1.0

71 pnaikai

Praesagittifera naikaiensis

The whole genome shotgun sequencing project of the acoel flatworm, Praesagittifera naikaiensis.

version: 1.0

Ptychodera flava 02

Ptychodera flava

Genomic data for Hawaiian Acornworm, Ptychodera flava.

version: v3.0

Symc1

Symbiodinium minutum

The genome project for a clade-B1 symbiodinium.

version: symb_aug_v1.120123

37 cladea

Symbiodinium sp. clade A3

The genome project for a clade-A3 symbiodinium.

version: symbA.v1.0

40 cladec

Symbiodinium sp. clade C

The genome project for a clade-C symbiodinium.

version: symbC.v1.0

Archived Sequencing Projects
Adi

Acropora digitifera

The whole genome shotgun sequence project of the Okinawan staghorn coral, Acropora digitifera.

version: oist_v1.1

Adi

Acropora digitifera

Repetitive DNA (%): 30.43; N50 (Mb): 1.81; L50: 63; GC content: 38.93; Gap (%): 8.8; Reads Coverage: 309; Assembled size (Mb): 422; Gene Number: 28,280; Average gene length (bp): 1,330; An...

version: 2

Aec

Acropora echinata

Repetitive DNA (%): 34.09; N50 (Mb): 1.39; L50: 84; GC content: 38.95; Gap (%): 15.27; Reads Coverage: 144; Assembled size (Mb): 411; Gene Number: 28,958; Average gene length (bp): 1,585;

version:

Age

Acropora gemmifera

Repetitive DNA (%): 32.98; N50 (Mb): 1.14; L50: 103; GC content: 38.93; Gap (%): 9.75; Reads Coverage: 158; Assembled size (Mb): 407; Gene Number: 30,776; Average gene length (bp): 1,321;

version:

Asu

Acropora subglabra

Repetitive DNA (%): 31.92; N50 (Mb): 1.09; L50: 110; GC content: 38.91; Gap (%): 13.43; Reads Coverage: 145; Assembled size (Mb): 432; Gene Number: 30,922; Average gene length (bp): 1,306;

version:

Ate

Acropora tenuis

Repetitive DNA (%): 34.58; N50 (Mb): 1.16; L50: 103; GC content: 38.93; Gap (%): 7.51; Reads Coverage: 188; Assembled size (Mb): 408; Gene Number: 26,445; Average gene lengt...

version:

Astreopora

Astreopora myriophthalma

version: 1.0

Mcac

Montipora cactus

version: 1.0

Meff

Montipora efflorescens

version: 1.0

Pfucata 3

Pinctada fucata

The whole genome shotgun sequencing project of Japanese Pearl Oyster.

version: 1.0 + 1.1

Pfucata 3

Pinctada fucata

The whole genome shotgun sequencing projects of Japanese Pearl Oyster.

version: ver2.0

Under decoding

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